{"id":20347,"date":"2022-01-28T10:15:49","date_gmt":"2022-01-28T09:15:49","guid":{"rendered":"https:\/\/ppr-antibioresistance.inserm.fr\/?p=20347"},"modified":"2022-01-28T10:15:52","modified_gmt":"2022-01-28T09:15:52","slug":"alphafold-protein-structure-database-updated-with-new-who-priority-pathogens","status":"publish","type":"post","link":"https:\/\/ppr-antibioresistance.inserm.fr\/en\/informations-et-communications\/actualites\/alphafold-protein-structure-database-updated-with-new-who-priority-pathogens\/","title":{"rendered":"AlphaFold Protein Structure Database updated with new WHO priority pathogens"},"content":{"rendered":"\n<p><a href=\"https:\/\/alphafold.ebi.ac.uk\/\" target=\"_blank\" rel=\"noreferrer noopener\">Alphafold<\/a>\u00a0has recently added the\u00a0proteome of nearly all the\u00a0<a href=\"https:\/\/amr.solutions\/pathogens-and-pipelines\/\" target=\"_blank\" rel=\"noreferrer noopener\">WHO priority pathogens<\/a><strong>\u00a0<\/strong>to their library of highly accurate prediction of protein structures. <a href=\"https:\/\/deepmind.com\/blog\/article\/putting-the-power-of-alphafold-into-the-worlds-hands\" target=\"_blank\" rel=\"noreferrer noopener\">AlphaFold<\/a>\u00a0is an AI system developed by\u00a0<a href=\"https:\/\/deepmind.com\/\" target=\"_blank\" rel=\"noreferrer noopener\">DeepMind<\/a>\u00a0that predicts a protein\u2019s 3D structure from its amino acid sequence. DeepMind and EMBL\u2019s European Bioinformatics Institute (EMBL-EBI) have partnered to make these predictions freely available to the scientific community. <\/p>\n\n\n\n<p>The database will be expanded during 2022 to cover a large proportion of all catalogued proteins (the over 100 million in UniRef90).<\/p>\n\n\n\n<p>AlphaFold DB currently provides predicted structures for the organisms listed <a href=\"https:\/\/alphafold.ebi.ac.uk\/download\" target=\"_blank\" rel=\"noreferrer noopener\">on this webpage<\/a>, as well as the majority of\u00a0<a href=\"https:\/\/www.expasy.org\/resources\/uniprotkb-swiss-prot\" target=\"_blank\" rel=\"noreferrer noopener\">Swiss-Prot.<\/a> You can download a prediction for an individual UniProt accession by visiting the corresponding structure page (example:\u00a0<a href=\"https:\/\/alphafold.ebi.ac.uk\/entry\/F4HVG8\" target=\"_blank\" rel=\"noreferrer noopener\">https:\/\/www.alphafold.ebi.ac.uk\/entry\/F4HVG8<\/a>).<\/p>\n\n\n\n<p>For downloading all predictions for a given species, use the download links below. Note that this option is only available on the desktop version of the site.<\/p>\n\n\n\n<p>These uncompressed archive files (.tar) contain all the available compressed PDB and mmCIF files (.gz) for a reference proteome. In the case of proteins longer than 2700 amino acids (aa), AlphaFold provides 1400aa long, overlapping fragments. For example, Titin has predicted fragment structures named as Q8WZ42-F1 (residues 1\u20131400), Q8WZ42-F2 (residues 201\u20131600), etc. These fragments are currently only available in these proteome archive files, not on the website.<\/p>\n\n\n\n<p>For downloading all predictions for all species, visit the FTP site:\u00a0<a href=\"https:\/\/ftp.ebi.ac.uk\/pub\/databases\/alphafold\" target=\"_blank\" rel=\"noreferrer noopener\">ftp:\/\/ftp.ebi.ac.uk\/pub\/databases\/alphafold<\/a><\/p>\n\n\n\n<p>More on the AlphaFold\u00a0Protein Structure Database <a href=\"https:\/\/alphafold.ebi.ac.uk\/download\" target=\"_blank\" rel=\"noreferrer noopener\">webpage<\/a>.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Alphafold\u00a0has recently added the\u00a0proteome of nearly all the\u00a0WHO priority pathogens\u00a0to their library of highly accurate prediction of protein structures. AlphaFold\u00a0is an AI system developed by\u00a0DeepMind\u00a0that predicts a protein\u2019s 3D structure from its amino acid sequence. DeepMind and EMBL\u2019s European Bioinformatics Institute (EMBL-EBI) have partnered to make these predictions freely available to the scientific community. The [&hellip;]<\/p>\n","protected":false},"author":139,"featured_media":20355,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":"","_links_to":"","_links_to_target":""},"categories":[31],"tags":[],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v22.8 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>AlphaFold Protein Structure Database updated with new WHO priority pathogens - French\u00a0National ANTIBIOTIC RESISTANCE Portal<\/title>\n<meta name=\"description\" content=\"Informations, \u00e9v\u00e8nements et actualit\u00e9s autour de l&#039;Antibior\u00e9sistance en France et \u00e0 l&#039;international.\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ppr-antibioresistance.inserm.fr\/en\/informations-et-communications\/actualites\/alphafold-protein-structure-database-updated-with-new-who-priority-pathogens\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"AlphaFold Protein Structure Database updated with new WHO priority pathogens - 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